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Livres
Articles (38)
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MotifClick: prediction ofcis-regulatory binding sites via merging cliques

Shaoqiang Zhang, Shan Li, Meng Niu, Phuc T Pham, Zhengchang Su

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 467 KB

english, 2011

The Evolution of Microbial Phosphonate Degradative Pathways

Jinling Huang, Zhengchang Su, Ying Xu

Journal:

Journal of Molecular Evolution

Année:

2005

Langue:

english

Fichier:

PDF, 253 KB

english, 2005

A Store-Operated Nonselective Cation Channel in Human Lymphocytes

Zhengchang Su, Xiaochuan Guo, Douglas S. Barker, Richard L. Shoemaker, Richard B. Marchase, J. Edwin Blalock

Journal:

Cellular and Molecular Neurobiology

Année:

2005

Langue:

english

Fichier:

PDF, 294 KB

english, 2005

Simultaneous prediction of transcription factor binding sites in a group of prokaryotic genomes

Shaoqiang Zhang, Shan Li, Phuc T Pham, Zhengchang Su

Journal:

BMC Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 1021 KB

english, 2010

Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes

Minli Xu, Zhengchang Su

Journal:

BMC Genomics

Année:

2009

Langue:

english

Fichier:

PDF, 498 KB

english, 2009

Computational analysis of LexA regulons in Cyanobacteria

Shan Li, Minli Xu, Zhengchang Su

Journal:

BMC Genomics

Année:

2010

Langue:

english

Fichier:

PDF, 2.85 MB

english, 2010

Computational prediction of Pho regulons in cyanobacteria

Zhengchang Su, Victor Olman, Ying Xu

Journal:

BMC Genomics

Année:

2007

Langue:

english

Fichier:

PDF, 491 KB

english, 2007

Ca2+ Modulation of Ca2+ Release-Activated Ca2+ Channels Is Responsible for the Inactivation of Its Monovalent Cation Current

Su, Zhengchang, Shoemaker, Richard L., Marchase, Richard B., Blalock, J. Edwin

Journal:

Biophysical Journal

Année:

2004

Langue:

english

Fichier:

PDF, 213 KB

english, 2004

Novel Changes in Discoidal High Density Lipoprotein Morphology: A Molecular Dynamics Study

Catte, Andrea, Patterson, James C., Jones, Martin K., Gray Jerome, W., Bashtovyy, Denys, Su, Zhengchang, Gu, Feifei, Chen, Jianguo, Aliste, Marcela P., Harvey, Stephen C., Li, Ling, Weinstein, Gilbert

Journal:

Biophysical Journal

Année:

2006

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2006

Directional RNA-seq reveals highly complex condition-dependent transcriptomes inE. coliK12 through accurate full-length transcripts assembling

Shan Li, Xia Dong, Zhengchang Su

Journal:

BMC Genomics

Année:

2013

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2013

SPIC: A novel similarity metric for comparing transcription factor binding site motifs based on information contents

Zhang, Shaoqiang, Zhou, Xiguo, Du, Chuanbin, Su, Zhengchang

Journal:

BMC Systems Biology

Année:

2013

Langue:

english

Fichier:

PDF, 639 KB

english, 2013

Genetic variation in exon 10 of the BPI gene is associated with Escherichia coli F18 susceptibility in Sutai piglets

Liu, Lu, Wang, Jing, Zhao, Qiaohui, Zi, Chen, Wu, Zhengchang, Su, Xianmin, Huo, Yongjiu, Zhu, Guoqiang, Wu, Shenglong, Bao, Wenbin

Journal:

Gene

Année:

2013

Langue:

english

Fichier:

PDF, 302 KB

english, 2013

Calcium Influx Factor Is Synthesized by Yeast and Mammalian Cells Depleted of Organellar Calcium Stores

Peter Csutora, Zhengchang Su, Hak Yong Kim, Andrej Bugrim, Kyle W. Cunningham, Richard Nuccitelli, Joel E. Keizer, Michael R. Hanley, J. Edwin Blalock and Richard B. Marchase

Journal:

Proceedings of the National Academy of Sciences

Année:

1999

Langue:

english

Fichier:

PDF, 1.70 MB

english, 1999

Identification of genes driving lineage divergence from single-cell gene expression data in C. elegans

Xu, Chen, Su, Zhengchang

Journal:

Developmental Biology

Année:

2014

Langue:

english

Fichier:

PDF, 1014 KB

english, 2014

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Mapping of microbial pathways through constrained mapping of orthologous genes

Olman, V., Hanchuan Peng,, Zhengchang Su,, Ying Xu,

Année:

2004

Langue:

english

Fichier:

PDF, 283 KB

english, 2004

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - A knowledge base for computational pathway reconstruction

Peng Wang,, Zhengchang Su,, Dam, P., Ying Xu,

Année:

2004

Langue:

english

Fichier:

PDF, 201 KB

english, 2004

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Pathway mapping with operon information: an integer-programming method

Fenglou Mao,, Olman, V., Zhengchang Su,, Chuang, D., Ying Xu,

Année:

2004

Langue:

english

Fichier:

PDF, 240 KB

english, 2004

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - CUBIC: search for binding sites

Olman, V., Jizhu Lu,, Dam, P., Zhengchang Su,, Ying Xu,

Année:

2004

Langue:

english

Fichier:

PDF, 257 KB

english, 2004

[IEEE 2011 IEEE 14th International Conference on Computational Science and Engineering (CSE) - Dalian, China (2011.08.24-2011.08.26)] 2011 14th IEEE International Conference on Computational Science and Engineering - A Simulated Annealing Algorithm for Resource Allocation and Scheduling with Precedence Constraints in the GLECLUBS/eGLECLUBS Pipelines

Zhang, Shaoqiang, Sun, Huazhi, Li, Guojun, Su, Zhengchang

Année:

2011

Langue:

english

Fichier:

PDF, 265 KB

english, 2011

De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets

Niu, Meng, Tabari, Ehsan S, Su, Zhengchang

Journal:

BMC Genomics

Année:

2014

Langue:

english

Fichier:

PDF, 1.82 MB

english, 2014

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Structural analysis of FGFR1 kinase activation through molecular dynamics simulation

Peng Wang,, Zhengchang Su,, Juntao Guo,, Ying Xu,

Année:

2004

Langue:

english

Fichier:

PDF, 333 KB

english, 2004

[IEEE Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering - Taichung, Taiwan (19-21 May 2004)] Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering - Computational inference of transcription regulation and response networks in Synechococcus sp. WH8102

Zhengchang Su,, PhuongAn Dam,, Olman, V., Ying Xu,

Année:

2004

Langue:

english

Fichier:

PDF, 217 KB

english, 2004

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - In silico construction of the carbon fixation pathway in synechococcus sp. WH8102

Dam, P., Zhengchang Su,, Olman, V., Ying Xu,

Année:

2004

Langue:

english

Fichier:

PDF, 260 KB

english, 2004

PorthoMCL: Parallel orthology prediction using MCL for the realm of massive genome availability

Ehsan Tabari,Zhengchang Su

Journal:

Big Data Analytics

Année:

2017

Langue:

english

Fichier:

PDF, 449 KB

english, 2017

Towards a map of cis-regulatory sequences in the human genome

Niu, Meng, Tabari, Ehsan, Ni, Pengyu, Su, Zhengchang

Journal:

Nucleic Acids Research

Année:

2018

Langue:

english

Fichier:

PDF, 2.28 MB

english, 2018

MaxMIF: A New Method for Identifying Cancer Driver Genes through Effective Data Integration

Hou, Yingnan, Gao, Bo, Li, Guojun, Su, Zhengchang

Journal:

Advanced Science

Année:

2018

Langue:

english

Fichier:

PDF, 1.69 MB

english, 2018

Phenotypic Antimicrobial Resistance Profiles of E. coli and Enterococcus from Dairy Cattle in Different Management Units on a Central California Dairy

Li, Xunde, Aly, Sharif S, Su, Zhengchang, Pereira, Richard V, Williams, Deniece R, Rossitto, Paul, Champagne, John D, Chase, Jennifer, Nguyen, Tran, Atwill, Edward R

Journal:

Clinical Microbiology Open Access

Année:

2018

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2018

Prediction of Driver Modules via Balancing Exclusive Coverages of Mutations in Cancer Samples

Gao, Bo, Zhao, Yue, Li, Yang, Liu, Juntao, Wang, Lushan, Li, Guojun, Su, Zhengchang

Journal:

Advanced Science

Année:

2018

Langue:

english

Fichier:

PDF, 2.01 MB

english, 2018

A store-operated nonselective cation channel in lymphocytes is activated directly by Ca 2+ influx factor and diacylglycerol

Su, Zhengchang, Csutora, Peter, Hunton, Dacia, Shoemaker, Richard L., Marchase, Richard B., Blalock, J. Edwin

Journal:

American journal of physiology. Cell physiology

Année:

2001

Fichier:

PDF, 210 KB

2001

Regulation of Ca 2+ release-activated Ca 2+ channels by INAD and Ca 2+ influx factor

Su, Zhengchang, Barker, Douglas S., Csutora, Peter, Chang, Theresa, Shoemaker, Richard L., Marchase, Richard B., Blalock, J. Edwin

Journal:

AJP Cell Physiology

Année:

2003

Langue:

english

Fichier:

PDF, 332 KB

english, 2003

A store-operated nonselective cation channel in lymphocytes is activated directly by Ca 2+ influx factor and diacylglycerol

Su, Zhengchang, Csutora, Peter, Hunton, Dacia, Shoemaker, Richard L., Marchase, Richard B., Blalock, J. Edwin

Journal:

American journal of physiology. Cell physiology

Année:

2001

Langue:

english

Fichier:

PDF, 210 KB

english, 2001

A new type of Ca 2+ channel blocker that targets Ca 2+ sensors and prevents Ca 2+ -mediated apoptosis

MANION, MICHAEL K., SU, ZHENGCHANG, VILLAIN, MATTEO, BLALOCK, J. EDWIN

Journal:

The FASEB Journal

Année:

2000

Fichier:

PDF, 333 KB

2000

A new type of Ca 2+ channel blocker that targets Ca 2+ sensors and prevents Ca 2+ -mediated apoptosis

MANION, MICHAEL K., SU, ZHENGCHANG, VILLAIN, MATTEO, BLALOCK, J. EDWIN

Journal:

The FASEB Journal

Année:

2000

Langue:

english

Fichier:

PDF, 333 KB

english, 2000

ProSampler: an ultra-fast and accurate motif finder in large ChIP-seq datasets for combinatory motif discovery

Li, Yang, Ni, Pengyu, Zhang, Shaoqiang, Li, Guojun, Su, Zhengchang, Berger, Bonnie

Journal:

Bioinformatics

Année:

2019

Langue:

english

Fichier:

PDF, 716 KB

english, 2019

Revealing favorable and unfavorable residues in cooperative positions in protease cleavage sites

Qi, Enfeng, Wang, Dongyu, Li, Yang, Li, Guojun, Su, Zhengchang

Journal:

Biochemical and Biophysical Research Communications

Année:

2019

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2019

Revealing favorable and unfavorable residues in cooperative positions in protease cleavage sites

Qi, Enfeng, Wang, Dongyu, Li, Yang, Li, Guojun, Su, Zhengchang

Journal:

Biochemical and Biophysical Research Communications

Année:

2019

Fichier:

PDF, 1.27 MB

2019

RecBic: a fast and accurate algorithm recognizing trend-preserving biclusters

Liu, Xiangyu, Li, Di, Liu, Juntao, Su, Zhengchang, Li, Guojun, Cowen, Lenore

Journal:

Bioinformatics

Année:

2020

Fichier:

PDF, 1014 KB

2020

KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins

Ma, Hongli, Li, Guojun, Su, Zhengchang

Journal:

BMC Genomics

Année:

2020

Fichier:

PDF, 1.50 MB

2020